## Faculty Publications

A. Mondal and A. Mandal (2019). Stratified Random Sampling for Dependent Inputs in Monte Carlo Simulations from Computer Experiments. In press. Accepted for publication in the Journal of Statistical Planning and Inference. DOI: 10.1016/j.jspi.2019.08.001.

C. Lewis-Beck, Z. Zhu, A. Mondal, J. J. Song, J. Hobbs, B. Hornbuckle, J. Patton (2019). A Parametric Approach to Unmixing Remote Sensing Crop Growth Signatures. Journal of Agricultural, Biological, and Environmental Statistics, Volume 24, Issue 3, pp 502 – 516.

Calvetti D, J Prezioso and E Somersalo (2019) Estimating hemodynamic stimulus and blood vessel compliance from cerebral blood flow data. J Theor Biol {460}: 243-261.

Calvetti D, Nakkireddy S and Somersalo E (2019) Approximation of continuous EIT data from electrode measurements with Bayesian methods. Inverse Problems {35}: 045012 (25pp)

Calvetti D, Somersalo E and Strang A (2019) Hierarchical Bayesian models and sparsity: ell_2 magic. Inverse Problems 35:035003 (26pp)

Calvetti D and Somersalo E. Brain energy metabolism. In: Jaeger D., Jung R. (eds) Encyclopedia of Computational Neuroscience. (2019) Springer, New York, NY.

Calvetti, D, Pascarella A, Pitolli F, Somersalo E. and Vantaggi B (2019) Brain Activity Mapping from MEG Data via a Hierarchical Bayesian Algorithm with Automatic Depth Weighting. Brain Topography {32}: 363-393.

Capo Rangel G, Prezioso J, Gerardo Giorda L, Somersalo E and Calvetti D (2019) Brain energetics plays a key role in the coordination of electrophysiology, metabolism and hemodynamics: evidence from an integrated computational model. J Theor Biol {478}:26-39.

Chae, M. and Walker, S. (2019). Bayesian consistency for a nonparametric stationary Markov model. Bernoulli. 25(2):877-901.

Eckford, Andrew W., and Peter J. Thomas. “The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors.” *IEEE Transactions on Molecular, Biological and Multi-Scale Communications* (2019).

Frank, G., Chae, M. and Kim, Y. (2019). Additive time-dependent hazard model with doubly truncated data. Journal of the Korean Statistical Society. 48(2):179-193.

M. Kliesch, S. Szarek and P. Jung. Simultaneous structures in convex signal recovery – revisiting the convex combination of norms. Frontiers Appl. Math. Stat. 5 (2019), 23 p. DOI Arxiv.org eprint 31 p.

Meckes, Elizabeth and Melcher, Tai. “Convergence of the empirical spectral measure of unitary Brownian motion”. Annales Henri Lebesgue, ENS Rennes,v. 1, 2018. Access

Strang, Alexander G., Karen C. Abbott, and Peter J. Thomas. “How to avoid an extinction time paradox.” Theoretical Ecology (2019): 1-21.

Thomas, P. J., Olufsen, M., Sepulchre, R., Iglesias, P. A., Ijspeert, A., & Srinivasan, M. (2019). Control theory in biology and medicine. Introduction to the special issue. *Biological Cybernetics* April 2019, Volume 113, Issue 1–2, pp 1–6. Access

Y. Guan, C. Sampson, J. D. Tucker, A. Mondal, W. Chang, M. Haran, D. Sulsky (2019). Computer Model Calibration Based on Image Warping Metrics: An Application for Sea Ice Deformation. Journal of Agricultural, Biological, and Environmental Statistics, Volume 24, Issue 3, pp 444 – 463.

A. Belu, and W. Maddox and W. Woyczyński, Copulas and dependency measures for multivariate Linnik distributions, International Journal of Statistics and Probability, 7(6) (2018), 27 pp.

A. Buchmann, L.J. Fauci, K. Leiderman, E. Strawbridge, L. Zhao, Mixing and pumping by pairs of helices in a viscous fluid, Physical Review E, (97) 023101, 2018. Access

A. Saichev and W.A. Woyczynski, Distributions in the Physical and Engineering Sciences: Volume 3: Random and Anomalous Fractional Dynamics in Continuous Media, Birkhauser/Springer 2018, 410 pp.

Alsenafi, A. Barbaro. A Convection-Diffusion Model for Gang Territoriality, Physica A, 510: 765-786, 2018. Access

Andrew W. Eckford, Benjamin Kuznets-Speck, Michael Hinczewski, and Peter J. Thomas, “Thermodynamic Properties of Molecular Communication.” 2018 IEEE International Symposium on Information Theory. Access

Calvetti D and Somersalo E (2018) Inverse problems: from regularization to Bayesian inference. WIREs Computational Statistics e1427 (19pp.)

Calvetti D, Capo Rangel G, Gerardo Giorda L and Somersalo E (2018) A computational model integrating brain electrophysiology and metabolism highlights the key role of extracellular potassium and oxygen. J Theor Biol 446, 238-258.

Calvetti D, Dunlop M, Somersalo E and Stuart A (2018) Iterative updating of model error in Bayesian inversion. Inverse Problems 34 (2): 025008

Calvetti D, J Prezioso and E Somersalo (2018) Estimating hemodynamic stimulus and blood vessel compliance from cerebral blood flow data. J Theor Biol Oct 10, Online version: DOI: 10.1016/j.jtbi.2018.10.011

Calvetti D, Pitolli F, Somersalo E and Vantaggi B (2018) Bayes meets Krylov: Statistically inspired preconditioners for CGLS. SIAM Review, 60(2), pp.429-461.

Casey O. Diekman, Peter J. Thomas, and Christopher G. Wilson, “Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp.” 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’18).

Chae, M., Martin, R. and Walker, S. (2018). Convergence of an iterative algorithm to the nonparametric MLE of a mixing distribution. *Statistics & Probability Letters*. **140**:142-146.

Chae, M. and Walker, S. An EM-based iterative method for solving large sparse linear systems. To appear in *Linear and Multilinear Algebra.*

Chae, M., Kim, Y. and Kleijn, B. The semi-parametric Bernstein-von Mises theorem for regression models with symmetric errors. To appear in *Statistica Sinica*.

Chae, M., Lin, L. and Dunson, D. Bayesian sparse linear regression with unknown symmetric error. To appear in *Information and Inference*.

Chae, M., Martin, R. and Walker, S. On an algorithm for solving Fredholm integrals of the first kind. To appear in *Statistics and Computing*.

D. B. Cortes, A. Dawes, J. Liu, M. Nickaeen, W. Strychalski, and A. Shaub Maddox, Unite to divide – how models and biological experimentation have come together to reveal mechanisms of cytokinesis, J. Cell Sci. (2018) 131: no. 24, jcs203570.

Deena R. Schmidt, Roberto F. Galan, and Peter J. Thomas, “Stochastic Shielding and Edge Importance for Markov Chains with Timescale Separation”, PLoS Computational Biology, June 18, 2018. Access

E. Meckes and M. Meckes, Linear Algebra. Cambridge University Press, 442 pp., 2018.

E. Werner and B. Klartag, Some open problems in Asymptotic Geometric Analysis, June/July 2018 Notices of the AMS

E. Werner and F. Besau, The Floating Body in Real Space Forms, Journal Diff. Geometry, Vol. 110, No. 2 (2018), 187—220

F. Besau and M. Ludwig and E. Werner, Weighted floating bodies and polytopal approximation, Transactions of the AMS 370, (2018), 7129–7148

G. Aubrun and S. Szarek*, Alice and Bob Meet Banach. The Interface of Asymptotic Geometric Analysis and Quantum Information Theory. Mathematical Surveys and Monographs,*Vol. 223, Amer. Math. Soc. 2017, 414 + xxi pp.(submitted) Comic strip and sample chapters

Gurarie D, Lo NC, Ndeffo-Mbah ML, Durham DP, King CH. The human-snail transmission environment shapes long term schistosomiasis control outcomes: Implications for improving the accuracy of predictive modeling. *PLoS neglected tropical diseases* 2018; **12**(5): e0006514.

H.C. Gromoll, M.W. Meckes, and L. Petrov, “Quenched central limit theorem in a corner growth setting”, Electron. Commun. Probab. 23 (2018), paper no. 101, 1–12.

J. Brynjarsdóttir, J. Hobbs, A. Braverman, and L. Mandrake (2018). Optimal Estimation versus MCMC for CO2 retrievals. Journal of Agricultural, Biological, and Environmental Statistics 23: 297. Access

J. Grote and E. Werner, Approximation of smooth convex bodies by random polytopes, Electronic Journal of Probability 23, (2018), 1–21

L. Zhao, L. Zhang and D. Yang, Analysis of micro-fluidic tweezers in the Stokes regime, Physics of Fluids, (30) 032006, 2018. __https://doi.org/10.1063/1.5017753__.

Langer, J. and Singer, D., *On the geometric mean of a pair of oriented, meromorphic foliations, Part I*, Complex Analysis and its Synergies, (2018), DOI: 10.1186/s40627-018-0015-z.

Liang-Jian Deng, Gemine Vivone,Weihong Guo, Mauro Dalla Mura, Jocelyn Chanussot, “A Variational Pansharpening Approach Based on Reproducible Kernel Hilbert Space and Heaviside Function”, IEEE transaction on image processing, 28 (9), pp 4330-4344, 2018.

Lo NC, Gurarie D, Yoon N, et al. Impact and cost-effectiveness of snail control to achieve disease control targets for schistosomiasis. *Proceedings of the National Academy of Sciences* 2018: 201708729.

Meckes, Elizabeth and Melcher, Tai. “Convergence of the empirical spectral measure of unitary Brownian motion”. Annales Henri Lebesgue, ENS Rennes,v. 1, 2018.

O. Maxian, Andrew T. Kassen, and W. Strychalski, A continuous energy-based immersed boundary method for elastic shells, 371 J. Comp. Phys. (2018) 333-362.

S. Hoehner, and S. Schütt and E. Werner, The Surface Area Deviation of the Euclidean Ball and a Polytope, Journal of Theoretical Probability 31, (2018), 244–267

S. Szarek, G. Aubrun, L. Lami, C. Palazuelos and A. Winter* Universal gaps for XOR games from estimates on tensor norm ratios. (submitted)*Arxiv.org eprint 43 p.

T. Dey, A. Piryatinska, W. Woyczyński, S. Ozinga, J.L. Alberts, Quantifying the complexity of time series with applications to postural balance studies of Parkinson’s patients*, Statistics in Biopharmaceutical Research *(2018), 1-15.

T. Rolski and W.A. Woyczynski, Czeslaw Ryll-Nardzewski’s contributions to probability theory (in Polish), Annals of the Polish Mathematical Society 54 (2018), 21-44.

Thomas Atta-Fosu, Weihong Guo, “Joint Segmentation and Nonlinear Registration Using Fast Fourier Transform and Total Variation”, Research in Shape Analysis, Springer, pp111-132, 2018.

Toor J, Alsallaq R, Truscott JE, Gurarie D, et al. Are We on Our Way to Achieving the 2020 Goals for Schistosomiasis Morbidity Control Using Current World Health Organization Guidelines? Clinical Infectious Diseases 2018; 66(suppl_4): S245-S52.

U. Fidalgo, E. Miña-Díaz, “Convergent interpolatory quadrature rules and orthogonal polynomials of varying measures.” Numer. Algor. 79 (2018), 423–435.

U. Fidalgo, “Convergent non complete interpolatory quadrature rules” (submitted)

W. A. Woyczynski, Geometry and Martingales in Banach Spaces, Taylor and Francis, CRC Press, 2018, 315 pp.

W. Strychalski, S. Bryant, B. Jadamba, E. Kilikian, X. Lai, L. Shahriyari, R. Segal, N. Wei, and L.A. Miller, Fluid Dynamics of Nematocyst Prey Capture, In: Radunskaya A., Segal R., Shtylla B. (eds) Understanding Complex Biological Systems with Mathematics. Association for Women in Mathematics Series, vol 14. Springer, Cham (2018)

W. Woyczyński, D. Cahoy, Log-moment estimators for the generalized Linnik and Mittag-Leffler distributions with applications to financial modeling, *Journal of Mathematics and Statistics*, (2018) 1-12.

W. Woyczyński, J. Albert, Y. Li, J. Sun, S. Nelson, Continuous Time Causal Mediation Analysis (2018), 1 20.

Youngmin Park, Kendrick M. Shaw, Hillel J. Chiel, Peter J. Thomas, “The Infinitesimal Phase Response Curves of Oscillators in Piecewise Smooth Dynamical Systems”, 29(5), European Journal of Applied Mathematics, Oct. 2018 (special issue on theory and applications of nonsmooth dynamical systems). Access

Alsallaq RA, Gurarie D, Mbah MN, Galvani A, King C. Quantitative assessment of the impact of partially protective anti-schistosomiasis vaccines. *PLoS neglected tropical diseases* 2017; **11**(4): e0005544.

Callahan M, Calvetti D and Somersalo E (2017) Beyond modeling limit: Bayesian inference across scales. SIAM/ASA J Uncertainty Quantification 5: 665-693.

Calvetti D, Cheng Y and Somersalo E (2016) Uncertainty quantification in flux balance analysis of spatially lumped and distributed models for a neuron-astrocyte complex. J Math Biol 73: 1823-1849.

Calvetti D, Pitolli F, Prezioso J, Somersalo E and Vantaggi B (2017) Priorconditioned CGLS-based quasi-MAP estimate, statistical stopping rule, and ranking of priors. SIAM J Sci Computing 39: S477-S500

Casey O. Diekman, Peter J. Thomas, Christopher G. Wilson, “Eupnea, Tachypnea, and Autoresuscitation in a Closed-Loop Respiratory Control Model”, J. Neurophys. 118.4 (2017): 2194-2215. Access

D. Calvetti: Quantifying Uncertainty in Numerical Analysis. Siam News

E. Meckes and M. Meckes, A sharp rate of convergence for the empirical spectral measure of a random unitary matrix. Zapiski Nauchnykh Seminarov POMI 457 (2017), 276–285, Journal of Mathematical Sciences.

E. Meckes and M. Meckes, Rates of convergence for empirical spectral measures: a soft approach. Convexity and Concentration, 157–181, IMA Volumes in Mathematics and its Applications 161, Springer, 2017.

E. Werner and Deping Ye, Mixed f-divergence for multiple pairs of measures, Canadian Mathematical Bulletin 60 (3), (2017), 641–654

E. Werner and U. Caglar, Stability results for some geometric inequalities and their functional versions, The IMA Volumes in Mathematics and its Applications 161: Convexity and Concentration, Springer (2017)

E. Werner, O. Giladi, J. Prochno, C. Schütt and N. Tomczak-Jaegermann, On the geometry of projective tensor products, Journal of Functional Analysis 273 (2017), 471–495

G. Aubrun and S. Szarek, *Dvoretzky’s theorem and the complexity of entanglement detection.*Accepted for QIP 2016.Discrete Analysis 2017:1, 20 pp.

Gurarie D, King C, Yoon N, Wang X, Alsallaq R. Seasonal dynamics of snail populations in coastal Kenya: Model calibration and snail control. *Advances in Water Resources* 2017; **108**: 397-405.

J. Bourke and N. Gurski, The Gray tensor product via factorisation, Appl. Categ. Structures 25 (2017), no. 4, 603-624.

J. Brynjarsdóttir and Ó. K. Nielsen (2017). Estimating trends in ptarmigan numbers. Pages 171-182 in D.L. Anderson, C.J.W. McClure, and A. Franke, editors. Applied raptor ecology: essentials from Gyrfalcon research. The Peregrine Fund, Boise, Idaho, USA.

J. Langer, Plotting the polyhedral geometry of a quadratic differential, Journal of Geometry 108(3), 837-849, (2017). DOI :10.1007/s00022-017-0378-y.

Joel Langer and David Singer, *Flat Curves*, Mediterranean. J. Math (2017) 14: 236

Julia Dobrosotskaya, Weihong Guo, “A PDE-Free Variational Method for Multi-Phase Image Segmentation Based on Multiscale Sparse Representations”, Journal of Imaging, MDPI, 2017.

K.S. Sheldon, L. Zhao, A. Chuang, I. N. Panayotova, L. A. Miller, and L. Bourouiba, Revisiting the physics of spider ballooning, in Women in Mathematical Biology: Research Collaboration Workshop, NIMBioS, Knoxville, June 2015, edited by A. T. Layton and L. A. Miller, Springer International Publishing, Cham, 163-178, 2017.

L. Zhao, I.N. Panayotova, A. Chuang, K.S. Sheldon, L. Bourouiba, and L.A. Miller, Flying spiders: Simulating and modeling the dynamics of ballooning, in Women in Mathematical Biology: Research Collaboration Workshop, NIMBioS, Knoxville, June 2015, edited by A. T. Layton and L. A. Miller, Springer International Publishing, Cham, 179-210, 2017. (I was interviewed by Inside Science for an article on this topic.) DOI https://doi.org/10.1007/978-3-319-60304-9_10

Liang-Jian Deng, Gemine Vivone, Weihong Guo, Mauro Dalla Mura, Jocelyn Chanussot, “A Variational Pansharpening Approach Based on Reproducible Kernel Hilbert Space and Heaviside Function”, Proc. International Conference on Image Processing, 2017.

N. Gurski, Donald Yau: “Colored Operads” (review), Jahresbericht der Deutschen Mathematiker-Vereinigung, 119 (2017), no. 3, 1-6.

N. Gurski, N. Johnson, A. Osorno, and M. Stephan, Stable Postnikov data of Picard 2-categories, Algebr. Geom. Topol. 17 (2017), no. 5, 2763-2806.

N. Gurski, N. Johnson, and A. Osorno, Extending homotopy theories across adjunctions, Homology Homotopy Appl 19 (2017), no. 2, 89-110.

N. Gurski, N. Johnson, and A. Osorno, K-theory for 2-categories, Adv. Math. 322 (2017), 378-472.

Robert E. Kass, Shun-ichi Amari, Kensuke Arai, Emery N. Brown, Casey O. Diekman, Markus Diesmann, Brent Doiron, Uri T. Eden, Adrienne Fairhall, Grant M. Fiddyment, Tomoki Fukai, Sonja Gru ̈n, Matthew T. Harrison, Moritz Helias, Nancy Kopell, Hiroyuki Nakahara, Jun-nosuke Teramae, Peter J. Thomas, Mark Reimers, Jordan Rodu, Hora- cio G. Rotstein, Eric Shea-Brown, Hideaki Shimazaki, Shigeru Shinomoto, Byron M. Yu, and Mark A. Kramer, “Computational Neuroscience: Mathematical and Statistical Perspectives.” Annual Reviews of Statistics and Its Applications, 5.1 2017. Access

Si Wang, Weihong Guo, Ting-Zhu Huang, Garvesh Raskutti, “Image inpainting using reproducing kernel Hilbert space and Heaviside functions”, Journal of Computational and Applied Mathematics, volume 311, issue C, p551-564, 2017.

S. Szarek and G. Aubrun, *Alice and Bob Meet Banach. The Interface of Asymptotic Geometric Analysis and Quantum Information Theory. Mathematical Surveys and Monographs,*Vol. 223, Amer. Math. Soc. 2017, 414 + xxi pp. Comic strip and sample chapters

T. Leinster and M. Meckes, The magnitude of a metric space: from category theory to geometric measure theory. Measure Theory in Non-Smooth Spaces, 156–193, DeGruyter Open, 2017.

Truscott J, Gurarie D, Alsallaq R, et al. A comparison of two mathematical models of the impact of mass drug administration on the transmission and control of schistosomiasis. *Epidemics* 2017; **18**: 29-37.

U. Fidalgo, “Convergent interpolatory quadrature schemes.” Appl. Numer. Math. 111 (2017), 111–143.

W. Woyczyński, In memoriam: Czeslaw Ryll-Nardzewski’s contributions to probability theory, *Probability and Mathematical Statistics*, 37 (2017),1-20.

Weihong Guo, Guohui Song and Yue Zhang, “PCM-TV-TFV: A Novel Two-Stage Framework for Image Reconstruction from Fourier Data”, SIAM Journal on Imaging Sciences, 10(4): pp2250-2274, 2017.

A. Barbaro, J. A. Canizo, J.A. Carrillo, P. Degond. Phase transitions in a kinetic flocking model of Cucker-Smale type, SIAM Multiscale Modeling and Simulation, 14(3): 1063-1088, 2016. Access

Alexander G. Dimitrov, Faramarz Fekri, Aurel A. Lazar, Stefan M. Moser, and Peter J. Thomas, “Guest Editorial: Biological Applications of Information Theory in Honor of Claude Shannon’s Centennial, Part II.” IEEE Transactions on Molecular, Biological, and Multi-scale Communications. Dec. 2016.

Andrew W. Eckford, Kenneth A. Loparo, and Peter J. Thomas, “Finite-State Channel Models for Signal Transduction in Neural Systems”. IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) (2016). Access

B. Gunaratnam and W. Woyczyński, Creation and preservation of shocks in Linnik conservation laws, *Dynamics of Continuous, Discrete and Impulsive Systems, Series A: Mathematical Analysis*, 23(2016), 231-250.

B. Gunaratnam, H. S. Haller, W. Woyczyński and J. G. Haller, Factors Affecting an Admitted Student’s Decision to Enroll, *Proceedings of the 2016 International Conference on Education, Training and Management Innovation, Shenzhen, China*, DESTech Publications, 1-9.

Calvetti D, Cheng Y and Somersalo E (2016) Uncertainty quantification in flux balance analysis of spatially lumped and distributed models for a neuron-astrocyte complex. J Math Biol 73: 1823-1849.

D. Brubaker, A. Barbaro, M. Chance, S. Mesiano. A Dynamical Systems Model of Progesterone Receptor Interactions with Inflammation in Human Parturition, BMC Systems Biology, 10(1), 2016. Access

David N. Lyttle, Jeffrey P. Gill, Kendrick M. Shaw, Peter J. Thomas, Hillel J. Chiel, “Robustness, Flexibility, and Sensitivity in a Multifunctional Motor Control Model”, Biological Cybernetics (2016). Access

E. Meckes and M. Meckes, Self-similarity in the circular unitary ensemble. Discrete Analysis, 2016: 9, 15 pp.

F. Besau and E. Werner, The Spherical Convex Floating Body, Advances in Mathematics 301 (2016), 867– 901

F. Lissemore, A. Lerner, S. Lenio, Martha Sajatovic, K. A. Smyth, C,Tatsuoka and W.A. Woyczynski, Detrending Changes the Temporal Dynamics of Semantic Fluency Task, Frontiers in Aging Neuroscience , October 2016, 1-9.

G. Aubrun and S. Szarek, *Dvoretzky’s theorem and the complexity of entanglement detection.*Accepted for QIP 2016.Discrete Analysis 2017:1, 20 pp.

Gurarie D, King CH, Yoon N, Li E. Refined stratified-worm-burden models that incorporate specific biological features of human and snail hosts provide better estimates of Schistosoma diagnosis, transmission, and control. *Parasites & vectors* 2016; **9**(1): 428.

H. Haller and W. Woyczyński, Interception efficiency of CVM-based lighting protection systems for buildings and the fractional Poisson model, arXiv:1602.01395v1 [physics.geo-ph], 2016, 1-22.

K. Chen, H. Haller, J. Kostrisky, J. Kostritsky and W. Woyczyński, Empirical study redux on choice of law and forum in mergers and acquisitions: The data and its limits, *Journal of Business and Securities Law*, 16(1) (2016), 1-45.

Karl S, White MT, Milne GJ, Gurarie D, et al. Spatial effects on the multiplicity of Plasmodium falciparum infections. PloS one 2016; 11(10): e0164054.

L. M. Berliner and J. Brynjarsdóttir (2016). A Framework for Multi-model Ensembling. SIAM/ASA Journal on Uncertainty Quantication. 4, 902-923. Access

L. Zhao, Hydrodynamics of highly viscous flow past a compound particle: analytical solution, Fluids, 1(4), 36, 2016.

Lenschow DH, Gurarie D, Patton EG. Modeling the diurnal cycle of conserved and reactive species in the convective boundary layer using SOMCRUS. *Geoscientific Model Development* 2016; **9**(3): 979-96.

Liangjian Deng, Weihong Guo, Ting-Zhu Huang, “Weighted Single Image Super-Resolution by Approximated Heaviside Functions”, Information Sciences, volume 348 Issue C, Pages 107-123, 2016.

P.-Y. Queau, W. Woyczyński and A.J. Lerner, Coalescing stochastic processes in retrieval from semantic memory*, Mathematica Applicanda*, 43(2) (2016), 193-206.

Paul C. Bressloff, Bard Ermentrout, Olivier Faugeras, and Peter J. Thomas, “Stochastic Network Models in Neuroscience: A Festschrift for Jack Cowan. Introduction to the Special Issue.” Journal of Mathematical Neuroscience 6(1),1-9, 2016. DOI 10.1186/s13408-016-0036-y

Peter J. Thomas and Andrew W. Eckford, “Capacity of a Simple Intercellular Signal Transduction Channel”, IEEE Transactions in Information Theory (62):12, (2016) DOI: 10.1109/TIT.2016.2599178. Access

Peter J. Thomas and Andrew W. Eckford, “Shannon Capacity of Signal Transduction for Multiple Independent Receptors”, International Society for Information Theory 2016 conference. Access

S. Lenio, F. Lissemore, M. Sajatovic, K. Smyth, C. Tatsuoka, W. Woyczyński and A. Lerner, Detrending Changes the Temporal Dynamics of Semantic Fluency Task, *Frontiers in Aging Neuroscience*, (2016), 1-9.

T. Dey, W. Hickey, B. Parakkal and W. Woyczyński, Deepwater Horizon: Locating submerged oil in ocean water using the k-means clustering technique, *Chance*, 29(2) (2016), 46-52.

T. Leinster and M. Meckes, Maximizing diversity in biology and beyond. Entropy 18 (2016) no. 3, article 88.

Thomas Atta-Fosu, Weihong Guo, Dana Jeter, Claudia Mizutani, Nathan Stopczynski, Rui Sousa-Neves, “3D Clumped Cell Segmentation Using Curvature Based Seeded Watershed”, Journal of Imaging, MDPI, 2016.

U. Caglar, M. Fradelizi, O. Guédon, J. Lehec, C. Schütt and E. Werner, Functional versions of Lp-affine surface area and entropy inequalities, International Mathematics Research Notices IMRN 4 (2016), 1223–1250

W. Strychalski and R. D. Guy, Intracellular pressure dynamics in blebbing cells, Biophys. J. 110, no. 5, (2016) 1168-1179.

Yue Zhang, Soumya Ray, Weihong Guo, “On the Consistency for Feature Selection with LASSO for Nonlinear Targets”, Int. Conf. Machine Learning, 2016.

A. Barbaro. A place for agent-based models: Comment on “Statistical physics of crime: A review” by M.R. D’Orsogna and M. Perc, Physics of Life Reviews, 12: 24-25, 2015 Access

A. Buchmann, L.J. Fauci, K. Leiderman, E. Strawbridge and L. Zhao, Flow induced by bacterial carpets and transport of microscale loads, Applications of Dynamical Systems in Biology and Medicine, the IMA Volumes in Mathematics and its Applications Volume 158, 35-53, 2015.

Andrew W. Eckford and Peter J. Thomas, “Information Theory of Intercellular Signal Transduction”. Asilomar Conference on Signals, Systems, and Computers (2015).

Calvetti D and Somersalo E (2015) Dimensional Analysis and Scaling. In Higham N (ed) {\em Princeton Companion in Applied Mathematics Princeton University Press pp. 90–93.

Calvetti D and Somersalo E (2015) Life sciences through mathematical modeling. Rend Fis Accad Lincei 26(Suppl 2): S193–S201.

Calvetti D, Cheng Y and Somersalo E (2015) A spatially distributed computational model of brain cellular metabolism. J Theor Biol 376 48–65.

Calvetti D, Hadwin PJ, Huttunen JMJ, Isaacson D, Kaipio JP, and Somersalo E (2015) Artificial boundary condition and domain truncation in electrical impedance tomography. Part II: Computed examples. Inverse Problems and Imaging 9: 767–789.

Calvetti D, Hadwin PJ, Huttunen JMJ, Isaacson D, Kaipio JP, McGivney D, Somersalo E and Volzer J (2015) Artificial boundary condition and domain truncation in electrical impedance tomography. Part I: Theory and preliminary examples. Inverse Problems and Imaging 9 749–766.

Calvetti D, Pascarella A, Pitolli F, Somersalo E and Vantaggi B (2015) A hierarchical Krylov-Bayes iterative inverse solver for MEG with physiological preconditioning. Inverse Problems 31 125005.

Calvetti D, Somersalo E and Spies R (2015) Variable order smoothness priors for ill-posed inverse problems. Math Comp 84: 1753–1773.

David F. Anderson, Bard Ermentrout, and Peter J. Thomas, “Stochastic Representations of Ion Channel Kinetics and Exact Stochastic Simulation of Neuronal Dynamics”, Journal of Computational Neuroscience, 38(1): 67-82 (2015). Access

D. Calvetti, L. Reichel and H. Xu: A CS decomposition for orthogonal matrices with application to eigenvalue computation. Linear Algebra Appl., 47: 197-232.

E. Meckes and M. Meckes, A rate of convergence for the circular law for the complex Ginibre ensemble. Ann. Fac. Sci. Toulouse Math. Series 6, 24 (2015) no. 1, 93–117.

Gurarie D, Yoon N, Li E, et al. Modelling control of Schistosoma haematobium infection: predictions of the long-term impact of mass drug administration in Africa. *Parasites & vectors* 2015; **8**(1): 529.

Hollingsworth TD, Adams ER, Anderson RM, Gurarie D, et al. Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. Parasites & vectors 2015; 8(1): 630.

J. Bourke and N. Gurski, A cocategorical obstruction to tensor products of Gray-categories, Theory Appl. Categ. 30 (2015), 387-409.

Julia Dobrosotskaya, Weihong Guo, “a PDE-free variational model for multiphase image segmentation”, Proc. SPIE 9597, Wavelets and Sparsity XVI, 2015.

K. Górska and W. Woyczyński, Explicit representation for multiscale Lévy processes, and asymptotics of multifractal conservation laws, *Journal of Mathematical Physics* (2015), 56(2015), 083511, 1-19.

L. Zhao, Fluid Dynamics of Flow Driven by Nodal Cilia Precessing Non-circular Cones, British Journal of Mathematics & Computer Science, (9)246-260, 2015.

L. Zhao, Transportation particles in flows driven by nodal cilia processing D-shaped cones, Journal of Coupled Systems and Multiscale Dynamics, (3) 244-252, 2015.

Liangjian Deng, Weihong Guo, Ting-Zhu Huang, Single image super-resolution via an iterative reproducing kernel Hilbert space method, IEEE Transactions on Circuits and Systems for Video Technology, 2015.

Liangjian Deng, Weihong Guo, Ting-Zhu Huang, Xi-Le Zhao, “Heavisde Image Edge Sharpening”, IEEE international workshop on multimedia signal processing, 2015.

M. Meckes, Magnitude, diversity, capacities, and dimensions of metric spaces. Potential Anal. 42 (2015) no. 2, 549–572.

M. Meyer, C. Schütt and E. Werner, Affine invariant points, Israel J. Math. 208, Issue 1 (2015), 163–192

M. Meyer, C. Schütt and E. Werner, Dual affine invariant points, Indiana J. Math. 64, (2015), 753–768

Martelli S, Calvetti D, Somersalo E and Viceconti M (2015). Stochastic modelling of muscle recruitment during activity. Interface Focus 5: 20140094.

P. Joshi, K. Horodecki, M. Horodecki, P. Horodecki, Ben Li, S. Szarek and T. Szarek*, Bound on Bell Inequalities by Fraction of Determinism and Reverse Triangle Inequality.*Phys. Rev. A. 92, 032329 (2015). Arxiv.org eprint 11 p.

Peter J. Thomas and Benjamin Lindner, Thomas and Lindner Reply. Physical Review Letters 115, 04 Aug 2015 (eid 069402). [Reply to A. Pikovsky, Comment on “Asymptotic Phase for Stochastic Oscillators”. Physical Review Letters 115, 04 Aug 2015 (eid 069401).]

Peter J. Thomas, “Commentary on Structured chaos shapes spike-response noise entropy in balanced neural networks, by Lajoie, Thivierge and Shea-Brown.” Frontiers in Computational Neuroscience, 10

March 2015. doi: 10.3389/fncom.2015.00023. Access

Rajeet Shrestha, Barclay Shaw, Wojbor A. Woyczynski, Peter J. Thomas, Thomas Fritsch, and Alan J. Lerner, “Growth and evolution of category fluency network graphs”, Journal of Systems and Integrative

Neuroscience, 1, (2015) Access

Si Wang, Weihong Guo, Ting-Zhu Huang, “Weighted total generalized variation for compressive sensing reconstruction”, Proc. Int. Conf. Sampling Theory and Applications (SampTA), p244—248, 2015.

U. Calgar and E. Werner, Mixed f-divergence and inequalities for log concave functions, Proc. Lond. Math. Soc. (3) 110 (2015), 271–290

U. Fidalgo, G. López Lagomasino, S. Medina Peralta. “Hermite-Padé approximation and certain systems of meromorphic functions.” Mat. Sb. 206 (2015), 57–76.

W. Strychalski, C.A. Copos, O.L. Lewis, and R. D. Guy, A Poroelastic Immersed Boundary Method with Applications to Cell Biology, J. Comp. Phys. 282 (2015) 77-97.

W. Woyczyński, B. Gunaratnam, Multiscale conservation laws driven by Lévy stable and Linnik diffusions: Asymptotics, shock creation, preservation and dissolution, *Journal of Statistical Physics* 56 (2015), 1-33.

W. Woyczyński, P. Biler, P. Krupski and G. Plebanek, Lwow of the West: A brief history of Wroclaw’s New Scottish Book (including a selection of problems), in *The Scottish Book: Mathematics from the Scottish Cafe*, R. D. Mauldin, Editor, Birkhauser-Boston-Basel-Stuttgart 2015, pp. 291-322.

W. Woyczyński, R. Schilling, William Feller: A Biography, in *Selected Works of William Feller, Volume 1 and 2*, Springer-Verlag 2015, pp. 17-40.

W. Woyczyński, R. Shresta, P.J. Thomas, T. Fritsch, and A.J. Lerner, Growth and evolution of category fluency network graphs,* Journal of Systems and Integrative Neuroscience* (2015) 1(1), 6-13.

W. Woyczyński, Rough Paths and Regularity Structures. Martin Hairer’s 2014 Fields Medal, *Annals of the Polish Mathematical Society (Wiadomosci Matematyczne)* (invited paper), (2015), 083511, 1-19.

Weihong Guo, Jing Qin, and Sibel Tari, “Automatic prior shape selection for image segmentation”, Research in Shape Modeling, Chapter 1: 1-8, Springer (2015).

A. Barbaro, P. Degond. Phase transition and diffusion among socially interacting self-propelled agents, Discrete and Continuum Dynamical Systems B, 19: 1249-1278, 2014. Access

A. Branquinho, U. Fidalgo, A. Foulquié Moreno. “An extension of Markov’s theorem.” Proc. Amer. Math. Soc. 142 (2014), 3491–3503.

Andrew W. Eckford, Benjamin Kuznets-Speck, Michael Hinczewski, and Peter J. Thomas, “Thermodynamic Properties of Molecular Communication.” 2018 IEEE International Symposium on Information Theory. Access

Arnold A, Calvetti D and Somersalo E (2014) Parameter estimation for stiff deterministic systems via ensemble Kalman filter. Inverse Problems 30: 105008.

Calvetti D, Ernst O and Somersalo E (2014) Dynamic updating of numerical model discrepancy using sequential sampling. Inverse Problems 30: 114019.

Calvetti D, Kaipio J and Somersalo E (2014) Inverse problems in the Bayesian framework. Inverse Problems 30(11), 110301.

Casey O. Diekman, Peter J. Thomas, and Christopher G. Wilson, “Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp.” 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’18).

Deena R. Schmidt and Peter J. Thomas, “Measuring edge importance: a quantitative analysis of the stochastic shielding approximation for random processes on graphs”, Journal of Mathematical Neuroscience, 4:6, April 17, 2014. Access

E. Cheng and N. Gurski, Iterated icons, Theory Appl. Categ. 29 (2014), 929-977.

E. Cheng, N. Gurski and E. Riehl, Cyclic multicategories, multivariable adjunctions and mates, Journal of K-Theory 13 (2014), no. 2, 337-396.

E. Meckes and M. Meckes, On the equivalence of modes of convergence for log-concave measures. Geometric Aspects of Functional Analysis, 385–394, Lecture Notes in Math. 2116, Springer, 2014.

G. Aubrun, S. Szarek, and D. Ye,* Entanglement thresholds for random induced states.*Comm. Pure Appl. Math. 67 (2014), 129-171. Arxiv.org eprint 34 p.

Gurarie D, King CH. Population biology of Schistosoma mating, aggregation, and transmission breakpoints: More reliable model analysis for the end-game in communities at risk. *PLoS One* 2014; **9**(12): e115875.

Immonen T, Calvetti D and Somersalo E (2014) Modeling HIV-1 dynamics and fitness in cell culture across scales. Bull Math Biol 76: 486-514.

J. Brynjarsdóttir and A. E. Gelfand (2014). On covariate importance for regression models with multivariate response. Journal of Agricultural, Biological, and Environmental Statistics, 19(4), 481-502. DOI: 10.1007/s13253-014-0187-9

J. Brynjarsdóttir and A. O’Hagan (2014). Learning about physical parameters: The importance of model discrepancy. Inverse Problems, 30, 114007 (24pp). Access

J. Brynjarsdóttir and L. M. Berliner (2014). Dimension-reduced modeling of spatio-temporal processes. Journal of the American Statistical Association, 109(508), 1647-1659. Access

J. Jenkinson and E. Werner, Relative entropies for convex bodies, Transactions of the AMS 366, 2889–2906 (2014)

Joel Langer and David Singer, The Trefoil, Milan Journal, 82 (2014),161-182

Kendrick M. Shaw, David N. Lyttle, Jeffrey P. Gill, Miranda J. Cullins, Jeffrey M. McManus, Hui Lu, Peter J. Thomas, and Hillel J. Chiel. “The Significance of Dynamical Architecture for Adaptive Responses to Mechanical Loads During Rhythmic Behavior”, Journal of Computational Neuroscience, appeared online 04 Sep. 2014. Access

P. Badziag, K. Horodecki, M. Horodecki, J. Jenkinson and S. Szarek*, Bound entangled states with extremal properties.*Phys. Rev. A. 90, 012301 (2014). Arxiv.org eprint 8 p.

Peter J. Thomas and Andrew W. Eckford, “Shannon Capacity of Signal Transduction for Multiple Independent Receptors”, International Society for Information Theory 2016 conference. Access

Peter J. Thomas and Benjamin Lindner, “Asymptotic Phase for Stochastic Oscillators”, Physical Review Letters, 113(25), 2014: 254101. Access

U. Calgar and E. Werner, Divergence for s-concave and log concave functions, Advances in Mathematics 257 (2014), 219–247

Weihong Guo, Jing Qin, Wotao Yin, “A new detail-preserving regularization scheme”, SIAM J. Imaging Science, 7(2), 1309—1334,2014.

A. Barbaro, L. Chayes, M. R. D’Orsogna. Territorial Development based on graffiti: a statistical mechanics approach, Physica A, 392(1): 252-270, 2013. Access

A. I. Saichev and W.A. Woyczynski, Distributions in the Physical and Engineering Sciences: Volume 2: Linear and Nonlinear Dynamics in Continuous Media, Birkhauser-Boston/Springer 2013, 409 pp.

Arnold A, Calvetti D and Somersalo E (2013) Linear multistep methods, particle filtering and sequential Monte Carlo. Inverse Problems 29:085007

Calvetti D and Somersalo E (2013) Quantitative in silico analysis of neurotransmitter pathways under steady state conditions, Front. Endocrinol., 08 October 2013 | doi: 10.3389.

Calvetti D, Somersalo E and Spies R (2013) Variable order smoothness priors for ill-posed inverse problems, Math. Comp., to appear.

E. Meckes and M. Meckes, Concentration and convergence rates for spectral measures of random matrices. Probab. Theory Related Fields 156 (2013), 145–164.

E. Meckes and M. Meckes, Spectral measures of powers of random matrices. Electron. Commun. Probab. 18 (2013) no. 78, 1–13.

E. Werner, f -divergence for convex bodies, Proceedings of the “Asymptotic Geometric Analysis”, workshop, Fields Institute, Toronto, (2013)

G. Paouris and E. Werner, On the approximation of a polytope by its dual Lp-centroid bodies, Indiana Univ. Math. J. 62, 235–247 (2013)

Homa L, Calvetti D, Hoover A and Somersalo E: Bayesian preconditioned CGLS for source separation in MEG time series, SIAM J. Sci. Comput. 13 (2013) B778-B798.

Immonen T, Calvetti D and Somersalo E (2013) Modeling HIV-1 dynamics and fitness in cell culture across scales, Bull. Math. Biol., to appear.

J. Qin and W. Guo, An efficient compressive sensing MR Image Reconstruction Scheme, ISBI, 306-309, 2013.

Joel Langer and David A. Singer, The trefoil, Milan J. Math., (2013), 22 pages, to appear.

M. Czystolowski, W. Szczotka, and W.A. Woyczynski, Levy processes as heavy traffic limits of tandem queues with heavy tails, Probability and Mathematical Statistics, 33 (2013), 107-120

M. Meckes, Positive definite metric spaces. Positivity 17 (2013) no. 3, 733–757.

Martelli S, Calvetti D, Somersalo E Viceconti M and Taddei F (2013) Computational tools for calculating alternative muscle force patterns during motion: a comparison of possible solutions. J Biomech. 46(12):2097-100. doi: 10.1016

Michiel Hochstenbach, David A. Singer, and Paul Zachlin, Numerical Approximation of the Field of Values of the Inverse of a Large Matrix , Textos de Matematica 44 (2013), 59-71.

Miranda C. N. Cheng, Xi Dong, John F. R. Duncan, Jerey Harvey, Shamit Kachru and Timm Wrase, Mathieu Moonshine and N = 2 String Compactications, June 2013. Journal of High Energy Physics 09 (2013) 030. arXiv:1306.4981

N. Gurski and A. Osorno, Infinite loop spaces, and coherence for symmetric monoidal bicategories, Adv. Math. 246 (2013) 1-32.

N. Gurski, Coherence in Three-Dimensional Category Theory, Tracts in Mathematics 201, Cambridge University Press, 2013, 277pp.

N. Gurski, The monoidal structure of strictification, Theory Appl. Categ. 28 (2013), 1-23.

P. Pepple Williamson, Estimation of the Population Size in the Classical Occupancy Problem, Communications in Statistics – Simulation and Computation, accepted April 2013.

S. Szarek,* On measures of symmetry and floating bodies. *Arxiv.org eprint 5 p.

W. Guo and J. Qin, A geometry guided image denoising scheme, Inverse Problems and Imaging, 7(2): 499-521, 2013.

W. Guo and M. Lai, Box spline wavelet frames for image edge analysis, SIAM J. Imaging Sci., 6(3), 1553-1578, 2013.

W. Strychalski and R. D. Guy, “A Computational Model of Bleb Formation”, Math. Med. Biol. vol. 30, no. 2, 115-130 (2013)

W. Woyczyński and Y. Belopolskaya, SDES, FBSDEs and fully nonlinear parabolic systems, *Rendiconti del Seminario Matematico, Universita e Politecnico di Torino*, 71(2) (2013), 209-218.

Y. Belopolskaya, and W.A. Woyczynski, Probabilistic approach to construction of viscosity solutions for the Cauchy problem for systems of fully nonlinear parabolic equations, Journal of Mathematical Sciences}, 188 (2013), 655-672 .

Y. Belopolskaya, and W.A. Woyczynski, SDEs, FBSDEs and fully nonlinear parabolic systems, Rendiconti del Seminario Matematico, Universita e Politecnico di Torino, 71(2) (2013), 209-218.

A. Piryatinska, W.A. Woyczynski, K. Loparo and M. Scher, Optimal channel selection for analysis of EEG-sleep patterns in neonates , Computer Methods and Algorithms in Biomedicine, 106 (2012), 14-26.

Christopher J. Cummins and John F. R. Duncan, An E8 correspondence for multiplicative eta-products, April 2012. Canadian Mathematical Bulletin 55 (2012), 67-72. doi:10.4153/CMB-2011-068-9

D. Calvetti and E. Somersalo, Computional Mathematical Modeling. An Integrated Approach through Scales. SIAM, Philadelphia, 2012.

D. Calvetti, E Somersalo, T. Immonen, R. Gibson, T. Leitner, M.A. Miller, E.J. Arts, A hybrid stochastic-deterministic computational model accurately describes spatial dynamics and virus diffusion in HIV-1 competition assay. J. Theor. Biol. 312C 120-132, 2012.

D. Calvetti, E. Somersalo, D. McGivney, Left and right preconditioning for electrical impedance tomography with strutural information. Inverse Problems 28, 055015, 2012.

D. Calvetti, E. Somersalo, Ménage á trois: the role of neurotransmitters in the energy metabolism of astrocytes glutamatergic, ad GABAergic neurons. J. Cerebral Blood Flow and Metabolism 32, 1472-1483, 2012. Electronic version: doi: 10.1038/jcbfm.2012.31.

D. Calvetti, E. Somersalo, R Occhipinti, W. F. Boron, A reaction-diffusion model of CO_{2 }influx into an oocyte. J. Theor. Biol., 185-203, 2012.

D. McGivney, D. Calvetti, E. Somersalo, Quantitiative imaging with electrical impedance spectroscopy. Phys. Med. Biol. 57, 7289 2012.

E. Somersalo, Y. Cheng and D. Calvetti, The metabolism of neurons and astrocytes through mathematical modesl. Ann. Biomed. Eng. 40 2328-2344, 2012.

E. Werner, f-Divergence for convex bodies, Proceedings of the “Asymptotic Geometric Analysis” workshop, Fields Institute, Toronto 2012

E. Werner, Renyi Divergence and Lp-affine surface area for convex bodies, Advances in Mathematics 230, 1040–1059 (2012)

G. Paouris and E. Werner, On the approximation of a polytope by its dual Lp-centroid bodies, to appear in Indiana Univ. Math. J.

G. Paouris and E. Werner, Relative entropy of cone measures and Lp centroid bodies, PROCEEDINGS LONDON MATH. SOC. 104 (2012), no. 2, 253–286.

Gurarie D, Karl S, Zimmerman PA, King CH, Pierre TGS, Davis TM. Mathematical modeling of malaria infection with innate and adaptive immunity in individuals and agent-based communities. *PloS one* 2012; **7**(3): e34040.

J. Jenkinson and E. Werner, Relative entropies for convex bodies, to appear in TRANSACTIONS OF THE AMS

J. Miao, W. Guo, S. Narayan and D. L. Wilson, “A simple application of compressed sensing to further accelerate partially parallel imaging”, Magnetic Resonance Imaging, 31(1), 75-85, 2012.

Joel Langer and David A. Singer, Subdividing the Trefoil by Origami, Geometry 1 (2012).

John Duncan, Pavel Etingof, Ivan Ip, Mikhail Khovanov, Matvei Libine, Anthony Licata, Alistair Savage and Michael Schlosser, On the work of Igor Frenkel, May 2012. (To appear in Contemporary Mathematics, AMS.)

M. Meckes and S. Szarek, Concentration for noncommutative polynomials in random matrices. Proc. Amer. Math. Soc. 140 (2012), 1803–1813.

M. Meckes, The spectra of random abelian G-circulant matrices. ALEAL at. Am. J. Probab. Math. Stat. 9 (2012) no. 2, 435–450.

Miranda C. N. Cheng and John F. R. Duncan, On Rademacher Sums, the Largest Mathieu Group, and the Holographic Modularity of Moonshine. Communications in Number Theory and Physics 6 (2012), no. 3. arXiv:1110.3859

Miranda C. N. Cheng and John F. R. Duncan, On the Discrete Groups of Mathieu Moonshine, December 2012. (To appear in Contemporary Mathematics, AMS.) arXiv:1212.0906

Miranda C. N. Cheng and John F. R. Duncan, The Largest Mathieu Group and (Mock) Automorphic Forms. String-Math 2011, Proceedings of Symposia in Pure Mathematics 85 (2012). arXiv:1201.4140

N. Gurski, Biequivalences in tricategories, Theory Appl. Categ. 26 (2012), 349-384.

P. Pepple Williamson, Usefulness of Asymptotic Distributions in the Classical Occupancy Problem, Communications in Statistics – Simulation and Computation, 41, 1501-1517, 2012.

S. Artstein-Avidan, B. Klartag and C. Schuett and E. Werner, Functional affine-isoperimetry and an inverse logarithmic Sobolev inequality, Journal of Functional Analysis 262, 4181-4204 (2012)

S. Meleard, B. Jourdain, and W.A. Woyczynski, Levy flights in evolutionary ecology, Journal of Mathematical Biology , 65 (4) (2012), 677-707.

S. Reisner, C. Schuett and E. Werner, A note on Mahler’s conjecture, INTERNATIONAL MATH. RESEARCH NOTICES, (2012), no. 1, 1–16.

S. Szarek and M. Meckes*, Concentration for noncommutative polynomials in random matrices.*Proc. Amer. Math. Soc. 140, No. 5 (2012), 1803-1813. Arxiv.org eprint 11 p.

S. Szarek, G. Aubrun and D. Ye,* Phase transitions for random states and a semicircle law for the partial transpose.*Phys. Rev. A. 85, 030302(R) (2012). Arxiv.org eprint 5 p.

S. Szarek, J. Fülöp and W. W. Koczkodaj,* On some convexity properties of the Least Squares Method for pairwise comparisons matrices without the reciprocity condition.*J. Global Optim. 54 (2012), no. 4, 689-706. Journal Website

W. Guo and W. Yin, Edge guided reconstruction for Compressive Imaging, SIAM J. Imaging Sci., 5(3), 809-834, 2012.

W. Strychalski and R. D. Guy, “Viscoelastic Immersed Boundary Methods for Zero Reynolds Number Flow”, Commun. Comput. Phys. vol. 12, no. 2, 462-478 (2012)

W. Woyczyński and Y. Belopolskaya, Generalized solutions of the Cauchy problem for systems of nonlinear parabolic equations and diffusion processes, *Stochastics and Dynamics*, 12 (2012), 1-31.

W. Woyczyński, A. Piryatinska, K. Loparo and M. Scher, Optimal channel selection for analysis of EEG-sleep patterns in neonates, *Computer Methods and Algorithms in Biomedicine*, 106 (2012), 14-26.

W. Woyczyński, S. Meleard and B. Jourdain, Lévy flights in evolutionary ecology, *Journal of Mathematical Biology* 65 (4) (2012), 677-707 (awarded 2013 Prix la Recherche in Paris for the best work in mathematical sciences).

W. Woyczyński, The legend of Hugo Steinhaus: Tales of two cities, up close and personal, *Annals of the Polish Mathematical Society (Wiadomosci Matematyczne)*, *6th European Congress of Mathematics Issue*, 48 (2012), 293-311.

W. Woyczyński, Z. Hass, C. Yanosko, and E. Becker, A lost opportunity: Recovering the end of Major League Baseball’s 1994 strike shortened season, *Mathematica Applicanda* 40 (2) (2012), 13-31.

W.A. Woyczyński , The legend of Hugo Steinhaus: tales of two cities, up close and personal, Annals of the Polish Mathematical Society, 6th European Congress of Mathematics Issue, 48 (2012), 293-311.

Wang X, Gurarie D, Mungai PL, Muchiri EM, Kitron U, King CH. Projecting the long-term impact of school-or community-based mass-treatment interventions for control of Schistosoma infection. *PLoS neglected tropical diseases* 2012; **6**(11): e1903.

Xiaosong Li and P. Pepple Williamson, Testing on the Common Mean of Normal Distributions Using Bayesian Methods, Journal of Statistical Computation and Simulation, accepted October 2012. (published online November 28, 2012, will appear in January or February of 2014)

Y. Gordon, A. Litvak, C. Schuett and E. Werner, Uniform estimates for order statistics and Orlicz functions, POSITIVITY, 16 (2012), no. 1, 1–28.

Ya. Belopolskaya and W.A. Woyczynski, Generalized solutions of the Cauchy problem for systems of nonlinear parabolic equations and diffusion processes, Stochastics and Dynamics, 12 (2012), 1-31.

Ya. Belopolskaya and W.A. Woyczynski, Probabilistic approach to construction of viscosity solutions for the Cauchy problem for systems of fully nonlinear parabolic equations, Proceedings of the Seminar of the St. Petersburg Division of the Mathematical Institute of Russian Academy of Sciences, 396 (2012), 31-66.

Z. Hass, W.A. Woyczynski, C. Yanosko, and Eric Becker, A lost opportunity: Recovering the end of Major League Baseball’s 1994 strike shortened season, Mathematica Applicanda , 40 (2) (2012), 13-31.

Anand, A., Chaubell, J., Bruno, O., Turc, C., Efficient Solution of Three-Dimensional Problems of Acoustic and Electromagnetic Scattering by Open Surfaces, WAVES 2011

Anand, A., Ovall, J., Turc, C., Well-conditioned boundary integral equations for two-dimensional sound-hard scattering problems in domains with corners, to appear in Journal Integral Equations and Applications, 2011

Bruno, O., Shipman, S., Turc, C., Venakides, S., Efficient Solution of Acoustic and Electromagnetic Scattering Problem in Three-Dimensional Periodic Media, WAVES 2011.

C. Li, Q. Hao, W. Guo and F. Hu, Compressive neural activity detection with fMR images using Graphical Model Inference, International Journal of Computational Biology and Drug Design, 2011, 3(3):187-200.

D. Calvetti and E. Somersalo, Dynamic activation model for glutamatergic neurovascular unit. J. Theor. Biol. 274 (2011) 12.29.

D. Calvetti and E. Somersalo, Statistical methods in imaging. In: O, Scherzer (Ed.): Handbook of Mathematical Methods in Imaging, 2011, Springer Verlag, 913-957.

D. Calvetti, B. Wodlinger, D.M. Durand and E. Somersalo, Hierarchical beamformer and cross-talk reduction in electroneurography. J. Neural Engineering 8 (2011) 056002.

D. Calvetti, L. Homa and E. Somersalo, Bayesian mixture models for source separation in MEG. Inverse Problems 27 (2011) 115001.

D. J. Meyer, J. Messer, T. Singh, P. J. Thomas, W. A. Woyczynski, J. Kaye, A. J. Lerner: Random Local Temporal Structure of Category Fluency Responses. Journal of Computational Neuroscience.

D. Michael Ackermann, Niloy Bhadra, Meana Gerges and Peter J. Thomas: Dynamics and Sensitivity Analysis of High Frequency Conduction Block. Journal of Neural Engineering.

E. Cheng and N. Gurski, The periodic table of n-categories for low-dimensions II: degenerate tricategories, Cahiers Topologie Geom. Differentielle Categ. 52 (2011), no 2., 82-125.

E. Meckes and M. Meckes: Another observation about operator compressions, Proc. Amer. Math. Soc. (2011), 1433-1439.

E. Werner and Deping Ye: On the Homothety Conjecture to appear in Indiana J. of Math.

E. Werner, S. Reisner and C. Schütt: Mahler’s conjecture and curvature International Mathematics Research Notices, DOI 10.1093/imrn/rnr003

E. Werner, Y. Gordon, A. Litvak and C. Schütt: Uniform estimates for order statistics and Orlicz functions Positivity, DOI 10.1007/s11117-010-0107-3

G. Aubrun, S. J. Szarek and D. Ye: Entanglement thresholds for random induced states. Arxiv.org eprint 29 p. http://arxiv.org/abs/1106.2264

G. Aubrun, S. Szarek and E. Werner: Hastings’s additivity counterexample via Dvoretzky’s theorem Communications in Mathematical Physics 305 (2011)

Gurarie D, Wang X, Bustinduy AL, King CH. Modeling the effect of chronic schistosomiasis on childhood development and the potential for catch-up growth with different drug treatment strategies promoted for control of endemic schistosomiasis. *The American journal of tropical medicine and hygiene* 2011; **84**(5): 773-81.

J. Brynjarsdóttir and L. M. Berliner (2011). Bayesian Hierarchical Modeling for Temperature Reconstruction from Geothermal Data. Annals of Applied Statistics, 5(2B), 1328-1359. DOI: 10.1214/10-AOAS452.

J. Langer and D. Singer, The lemniscatic chessboard, Forum Geometricorum.

J. Langer, A theorem on meromorphic parameterizations of real algebraic curves, Journal of Geometry.

J. Qin and W. Guo, An automatic additive and multiplicative noise removal scheme with sharpness preservation, Proceedings of International Symposium on Biomedical Imaging, 2011, p1819-1822.

J. V. Toups, J. M. Fellous, P. J. Thomas, T. J. Sejnowski, P. H. Tiesinga: Finding the event structure of neuronal spike trains. Neural Computation.

J. Langer, The conformal Vega disk, Bridges Proceedings 2011.

Kahle, Matthew and Meckes, Elizabeth, Limit theorems for Betti numbers of random simplicial complexes, ArXiv preprint http://arxiv.org/abs/1009.4130.

Karl S, Gurarie D, Zimmerman PA, King CH, Pierre TGS, Davis TM. A sub-microscopic gametocyte reservoir can sustain malaria transmission. *PloS One* 2011; **6**(6): e20805.

Kotelenez, P. and Seadler, B.: On Hahn-Jordan Decomposition for Signed Measure Valued Stochastic Partial Differential Equations. Stochastics and Dynamics, 2010.

M. Leitman and P. Villaggio: An Approximate Theory of Pseudo-Arches. To appear in Int’l. J. Solids and Structures

M. Meckes and S. Szarek, Concentration for noncommutative polynomials in random matrices. To appear in Proc. Amer. Math. Soc. Arxiv.org eprint 11 p. http://arxiv.org/abs/1101.1923

Meckes, Elizabeth, Projections of probability distributions: A measure-theoretic Dvoretzky theorem, In Geometric Aspects of Functional Analysis: Papers from the Israel Seminar (GAFA), 2011 (to appear).

N. Gurski, Loop spaces, and coherence for monoidal and braided monoidal bicategories, Adv. Math. 226 (2011), no. 5, 4225-4265.

N. Gurski, Nerves of bicategories as stratified simplicial sets, J. Pure Appl. Algebra 213 (2009), no. 6, 927-946.

Peter J. Thomas: A Lower Bound for the First Passage Time Density of the Suprathreshold Ornstein-Uhlenbeck Process. Journal of Applied Probability 48(2), June 2011.

S. J. Szarek, E. Werner and K. Zyczkowski, *How often is a random quantum state k-entangled?*J. Phys. A: Math. Theor. 44, 045303 (2011). Arxiv.org eprint 19 p.

S. Szarek, G. Aubrun and E. Werner*, Hastings’s additivity counterexample via Dvoretzky’s theorem.*Comm. Math. Physics 305, 85-97 (2011). Arxiv.org eprint 12 p.

Wojbor Woyczyński, David Meyer, Jason Messer, Tanya Singh, Peter J. Thomas, Jeffrey Kaye, M.D., and Alan J. Lerner M.D. Random local temporal structure of category fluency responses, *Journal of Computational Neuroscience* 32 (2011), 213-231.

D. Calvetti and E. Somersalo, Subjective knowledge or Objective Belief? In: L. Biegler, G. Biros, O. Gjattas, M. Heinkenschloss, D. Keyes, B. Mallick, Y, Marzouk, L. Tenorio, B. van Bloemen Waanders, K. Willcox (eds) Large-scale inverse problems and quantification of uncertainity, 2010, John Wiley & Sons, Ltd, UK, 33-70

D. Gurarie, C.H. King, X. Wang: (2010), A new approach to modeling Schistosomiasis transmission based on stratified worm burden, Parasitology.

E. Meckes, Approximation of projections of random vectors, J. Theoret. Probab.

E. Werner and D. Ye, Inequalities for mixed p-affine surface area, Math. Annalen 347 (2010), 703-737

E. Werner, G. Aubrun and S. Szarek, Nonadditivity of Renyi entropy and Dvoretzky’s theorem, Journal of Mathematical Physics 51 (2010) 022102 and Virtual Journal of Quantum Information 10 (2010)

F. Huang, Y. Chen, W. Yin, W. Lin, X. Ye, W. Guo, Arne Reykowski: A rapid and robust numerical algorithm for sensitivity encoding with sparsity constraints: Self-feeding sparse SENSE, to appear on Magnetic Resonance in Medicine (2010).

G. Aubrun, S. Szarek and E. Werner, Hastings’ additivity counterexample via Dvoretzky’s theorem. Arxiv.org eprint 11 p. http:arxiv.org/abs/1003.4925

G. Aubrun, S. Szarek and E. Werner, Non-additivity of Rényi entropy and Dvoretzky’s theorem. J. Math. Phys. 51, 022102 (2010). Arxiv.org eprint 8 p. http://arxiv.org/abs/0910.1189

J. Bardsley, D. Calvetti and E. Somersalo: Hierarchical regularization for edge preserving reconstruction of PET images. Inverse Problems 26 (2010)

J. Fulop, W. Koczkodaj and S. Szarek, A different perspective on a scale for pairwise comparisons. LNCS Transactions on Computational Collective Intelligence, to appear

J. Langer, The Vitruvian figure of eight, Bridges Pecs, Proceedings 2010.

J. T. Da Re, D. P. Kouri, P. A. Zimmerman, P. J. Thomas, Differentiating Plasmodium falciparum Alleles by Transforming Cartesian X,Y Data to Polar Coordinates, BMC Genetics, 11:57, 29 June 2010. Reprint: http://www.biomedcentral.com/1471-2156/11/57.

L. Kristensen, D.Lenschow, D. Gurarie, N. Jensen: A Simple Model for the Vertical Transport of Reactive Species in the Convective Atmospheric Boundary Layer, Boundary-Layer Meteorology: Volume 134, Issue 2 (2010), Page 195

M. Leitman and P. Villagio: Optimal Parabolic Arches, Int. J. of Eng. Sci. in honor of K.R. Rajagopal’s 60th birthday.

P. Indyk and S. Szarek, Almost-Euclidean subspaces of $\ell_1^N$ via tensor products: a simple approach to randomness reduction. RANDOM 2010, to appear Arxiv.org eprint 10 p. http://arxiv.org/abs/1001.0041

P. Kotelenez, and T.G. Kurtz, Macroscopic Limit for Stochastic Partial Differential Equations of McKean-Vlasov Type. “Probab. Th. Rel. Fields” Vol. 146, Issue 1-2, p. 189(2010).

P. Kotelenez, Stochastic Flows and Signed Measure Valued Stochastic Partial Differential Equations. Theory of Stochastic Processes (November 2010).

R. Occhipinti, E. Somersalo and D. Calvetti: Energetics of inhibition: insights with a computational model of the human GABAergic neuron astrocyte complex, to appear in J. Cereb. Blood Flow Metab

S. Szarek, G. Aubrun and E. Werner,* Non-additivity of Rényi entropy and Dvoretzky’s theorem.*J. Math. Phys. 51, 022102 (2010). Arxiv.org eprint 8 p.

S. Szarek, On norms of completely positive maps. In Proceedings of IWOTA 2008, Oper. Theory Adv. Appl. Vol. 202, Birkhauser, Basel 2010, 535-538. (preliminary version was listed as a preprint under 2006)

S. Szarek, P. Indyk*, Almost-Euclidean subspaces of $\ell_1^N$ via tensor products: a simple approach to randomness reduction.*In “APPROX and RANDOM 2010,” M. Serna et al (Eds.) LNCS 6302, Springer-Verlag Berlin Heidelberg 2010, 632-641. Arxiv.org eprint 11 p.

W. Guo, W.Yin: EdgeCS: Edge Guided Compressive Sensing Reconstruction, to appear on Proceedings of SPIE Visual Communication and Image Processing (2010)

W. Koczkodaj and S. Szarek, On Distance-based Inconsistency Reduction Algorithms for Pairwise Comparisons. Logic Journal of IGPL, to appear. Available at http://jigpal.oxfordjournals.org/cgi/content/abstract/jzp062

W. Strychalski, D. Adalsteinsson, and T. C. Elston, “A Cut Cell Method for Simulating Spatial Models of Biochemical Reaction Networks in Arbitrary Geometries”, Comm. App. Math. Comp. Sci. vol. 5, no. 1, 31-53 (2010)

W. Strychalski, D. Adalsteinsson, and T. C. Elston, “Simulating Biochemical Signaling Networks in Complex Moving Geometries”, SIAM J. Sci. Comput. vol. 32, no. 5, 3039-3070 (2010)

Wojbor Woyczyński, V. Uchaykin, and D. Cahoy, Parametric estimation for fractional Poisson processes, *Journal of Statistical Planning and Inference*, 140 (2010), 3106-3120.